PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G159000.5
Common NameB456_008G159000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 319aa    MW: 35931.2 Da    PI: 9.1063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G159000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07287311730
                         HHHHHHHHHHHHHHHHHHCTSCC.C CS
                 HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                         + Er+RR++i++++++Lr l+Pk +
  Gorai.008G159000.5 287 ITERNRRKKIKDGLFKLRALVPKiS 311
                         68********************944 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-1811158IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.18E-5276311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.746280318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-4283313No hitNo description
Gene3DG3DSA:4.10.280.106.5E-5287310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-5287311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQLQG  60
PPLCRDAQFQ HSIRSKACEA LSHFPFAVSL YAGENRIHGE VAISSQPKWL NHANISTSLS  120
SEETMGTQVL IPVFGGLIEL FASKNIPKDQ NIVELIRTEC NALLKAETTT AESYRKANLH  180
KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDEQLK QPIGTYYGTK  240
RLGCSQNVCA QQTEIGLVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL  300
FKLRALVPKI SKVGSQFP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438254.10.0PREDICTED: transcription factor bHLH90-like isoform X2
TrEMBLA0A0D2T6W60.0A0A0D2T6W6_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.14e-53bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]